This version applies to the current release of the BisQue user manual.

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Bisque User Manual

Maintenance: Tues, Jan 28, 2020


Discovery Environment         8:00am to 5:00pm MST
The Discovery Environment will be unavailable while patches and updates are applied.
        ** Currently running analyses will be terminated. Please plan accordingly.

Data Store                    8:00am to 5:00pm MST
The Data Store will be unavailable during the maintenance period.
Data Commons                  8:00am to 5:00pm MST
The Data Commons will be unavailable during the maintenance period.
Atmosphere and Cloud Services 8:00am to 5:00pm MST
Marana Cloud: Atmosphere instances in the Marana Cloud will be operational; however, you will not be able to use the Data Store within your instance, and you may not be able to access the Atmosphere web interface.
User Portal                   8:00am to 5:00pm MST
The User Portal,, will be unavailable while we perform maintenance and updates.
Agave/Science API             8:00am to 5:00pm MST
The Agave/Science API will be unavailable during this maintenance period.
DNA Subway                    8:00am to 5:00pm MST
DNA Subway will be unavailable during this maintenance period.
The following services will NOT be affected by the maintenance: CyVerse Wiki and JIRA


Keep up to date with our maintenance schedules on the CyVerse public calendar
Check your local timezone here 
Please contact for any questions, or concerns.







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BisQue data analysis is performed using different modules, which have been registered with Bisque.

  1. Launch BisQue.
     How do I do it?

     Click Sign in at the top right of the window, click Sign in again, enter your CyVerse user name, and then click Login. If you haven't already done so, you will need to get access to BisQue. Learn more about logging in and out of BisQue at Logging In and Out of BisQue.

  2. Click Analyze at the top of the screen. 
  3. In the module list, select the module to use.
    The Help and workflow panel for the module opens on the right side of the screen.
  4. Complete the required fields for the module. See the Help and workflow panel on the right for detailed instructions.
  5. In the Run algorithm section, click Run to execute the analysis. Text on the button changes as the analysis progresses to completion.
  6. When completed, view the results in the Results section.

Exporting analyses results

To export the results of a table of results to your machine in CSV (if you want to analyze or massage it in Excel) or XML (if you want to use post-processing software for further analysis) format:

  1. In the Results section of the Analyze module, click Export.
  2. Specify either CSV or XML.
  3. Click OK to save the file.

Viewing analysis results

In addition to viewing the results in the Results section, as outlined above, you can view results at any time.

  1. From the Image Repository home page, click the Analysis tab in My Recent Stuff:
  2. Select the analysis whose results you want to view.


Graphical objects that are the results of multiple analyses on the same image can be viewed simultaneously in BisQue, with different analyses in different colors if so desired. To do so, right-click with two fingers on the analysis to be overlaid and then use the color bar that appears.


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