The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Add GO to Blastp-uniprot output

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Takes a blastp output against a uniprot database, and provides a list of GO annotations that are linked to the blastp matches. Designed to be used with the Blastp a subset of uniprot app, ideally with the default setting of using uniprot entries that have experimentally derived annotations.

Quick Start

Test Data

(info)

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Add_GO_to_Blastp-uniprot.

Input File(s)

Use blastp_out.txt from the directory above as test input.

Parameters Used in App

Use the Default settings with the Test data (there are no parameters).

Output File(s)

The output file is always named goa_entries.srt.txt, which is .gaf format.

Tool Source for App

Script created at iPlant, and follows an Agbase workflow (http://www.agbase.msstate.edu/cgi-bin/tools/index.cgi).

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