The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Assess Assembly vs whole genome

Assess Assembly vs whole genome is a basic version of the Plantagora projects tool for evaluating assemblies by comparing them to a reference genome.

Quick Start

Test Data

Icon

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> assess_assembly.

Input File(s)

Use arabtest2 and tair10genome.fas from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect text files named after the input value for 'header' as output. For the test case, the output file you will find in the example_data directory is named arabtest.report.

Tool Source for App