The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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BLASTp UniProt

 

Creates a blast database for a selected subset of the Uniprot database, and then runs Blastp against it. Intended for annotation of a transcriptome.

Quick Start

Test Data

(info)

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> blastp.

Input File(s)

Use BAtestpep.fa (query ) from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use the Default parameters with the Test data.

Output File(s)

For the test case, the output file you will find in the example_data directory is named blastp_out.txt

Tool Source for App

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download

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