The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Bayesian BiClustering

Bayesian BiClustering is a Bayesian method for finding biclusters, which are sets of genes whose expression profiles are mutually similar within a subset of experimental conditions/samples.

Quick Start

  • To use Bayesian BiClustering, upload your data in a tab-delimited text file format.
  • Resources: documentation

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > bayesian_biclustering

Input File(s)

  • Use a tab-delimited text file as a test input file. To generate outputs below, use salt_root_TF.txt  as a test data file.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output Files(s)

  • Expect a text file as output. The outputs for the test run are called results.txt

Tool Source for App