The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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ConvertTraitID 0.0.1

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Mapping accession names to accession ids.

Quick Start

  • To use TNRS4GWAS 0.0.1, import your data in .txt format.

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under /iplant/home/shared/iplant_training/GWAS_Sorghum_LWCN/B_define_traits.

Input File(s)

Use height.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

    • Use these parameters within the DE app interface:
      • As species select Sorghum
      • Under Option leave the default option to 0 for number of header rows
      • In the output give a name trait_tnrs.txt

Output File(s)

Expect a text file called trait_tnrs.txt and an unmapped.txt as output.

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