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Reduce the number of reads in fastq or fasta files to reduce overload of an assembler.
- To use Downsample reads, import your data in fastq format.
- Resources: http://hannonlab.cshl.edu/fastx_toolkit/commandline.html#fastx_collapser_usage
from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, except change unpaired to paired reads.
Expect a as output files named after the input files. For the test case, the output files you will find in the example_data directory are named: