The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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FASTA Minimum Size Filter

FASTA Minimum Size Filter applies a size filter to a FASTA file, excluding the sequence records smaller than a specified base pair size.

Quick Start

  • To use FASTA Minimum Size Filter, upload your data in FASTA format.
  • Resources: None

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > fasta_minimum_size_filter

Input File(s)

Use euc-k27-1.fa as test data.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Minimum Length - 300

Output File(s)

Expect a FASTA file 'fasta_filter_by_length_out.fa' as output.

Tool Source for App

  • None

3 Comments

  1. ★☆☆☆☆ Very useful tool (by simonuribe)

  2. ★★☆☆☆ null (by sanjeevsingh)

  3. ★★★★★ Does what it's supposed to. (by rfolk)