The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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FASTQ_SHRINKER 

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Quality filtering, trimming and collapsing workflow to pre-process reads for genome resequencing.

Quick Start

  • To use FASTQ_SHRINKER, import your data in fastq format.
  • Fastq shrinker is a Discovery Environment workflow, a series of apps brought together to successive trimming functions and finally to remove duplicate reads from a fastq file. Potentially a useful way to prepare for assembly.
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