The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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FASTX Toolkit

The FASTX Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Quick Start

  • To use FASTX Tools, run any of the apps below.
  • Resources: documentation

Apps that Use FASTX


This list may not be exhaustive and probably needs to be updated.

FASTX Barcode Splitter
FASTX nucleotide distribution (archived)
Find SNPs (archived)
iPlantPhyloviewer (archived)
neighbor (archived)
PL (archived)
protdist (archived)

Tool Source for App