FASTX fastq quality filter 0.0.14
FASTX Quality Filter is based on the FASTX Toolkit. It filters next-gen sequence based on average base quality scores.
- To use FASTX Quality Filter, upload your data in FASTQ format.
- Resources: documentation
All files are located in the Community Data directory of the CyVerse Discovery Environment at the following path:
Community Data > iplantcollaborative > example_data > fastx_quality_filter
Use 10K_SRR192294_1.fastq as test data.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use these parameters within the DE app interface:
- Minimum quality score to keep - 30
Expect a FASTQ file fastq_quality_filter_out.fastq as output.