The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

The box below searches only this space.
To search the entire iPlant wiki, enter your query in the box at the upper right.






Skip to end of metadata
Go to start of metadata


FaST-LMM Results Plotter 

Community rating: ?????

Plots genetic base-pairs sorted by chromosome on the x-axis and negative log of p-values on the y-axis (aka., a Manhattan plot) using ggplot2 from the results file of a FaST-LMM GWAS analysis.

Quick Start 

  • To use FaST-LMM Results Plotter, have your FaST-LMM output file somewhere in your data store!
  • Open the application through the DE interface.
  • Select a title for your analysis.
  • Click the second section to select the FaST-LMM output file as your new input.
  • Click "Launch Analysis"!



  • No labels