The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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FaST-LMM Results Plotter 

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Plots genetic base-pairs sorted by chromosome on the x-axis and negative log of p-values on the y-axis (aka., a Manhattan plot) using ggplot2 from the results file of a FaST-LMM GWAS analysis.

Quick Start 

  • To use FaST-LMM Results Plotter, have your FaST-LMM output file somewhere in your data store!
  • Open the application through the DE interface.
  • Select a title for your analysis.
  • Click the second section to select the FaST-LMM output file as your new input.
  • Click "Launch Analysis"!

 

 

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