sample random reads from a fastq file. Given a FASTQ file, random reads are sampled and output, with or without replacement. The number of reads to sample can be specified with the number of total reads option or in terms of the proportion of total reads using option.
If two files are given, the input is treated as paired-end, and matching pairs are sampled and output into separate files: [prefix].1.fastq and [prefix].2.fastq, where [prefix] is set with the output option.
- The number of reads to sample: Default is 10000
The proportion of the total reads to sample
- Sample with replacement
- Output file prefix: Default is 'sample'
Input fastq files
Please run Infernal app with the test data located at Community Data > iplantcollaborative > example_data > Infernal (/iplant/home/shared/iplantcollaborative/example_data/Infernal)
- The number of reads to sample: (Default is 10000)
The proportion of the total reads to sample: 0.5
- Output file prefix: (Default is 'sample')
Input fastq files: test.fastq
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