The DE Quick Start tutorial provides an introduction to basic DE functionality and navigation.
Rationale and background:
"fastq-sample" - sample random reads from a fastq file
Input fastq file
- The number of reads to sample: Default is 10000
The proportion of the total reads to sample
Sample with replacement (Default is Sample without replacement)
Output file prefix: Default is 'sample'
Please run Infernal app with the test data located at Community Data > iplantcollaborative > example_data > fastq-sample (/iplant/home/shared/iplantcollaborative/example_data/fastq-sample)
Input fastq files: test.fastq
- The number of reads to sample: 50 (Default is 10000)
The proportion of the total reads to sample: Leave this empty
- Sample with replacement (Default is Sample without replacement): Leave this unchecked
- Output file prefix: (Default is 'sample'): Leave this empty
You should expect "sample.fastq" file with 50 reads
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