The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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GOanna

Runs BLASTp of a single peptide FASTA file vs phylogenetic subsets of Uniprot accessions provided by AgBase. Transfers gene ontology (GO) annotations to from BLASTp matches to the query gene products.

Quick Start

Test Data

(info)

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> GOanna

Input File(s)

Use CFLO_1.fa from the directory above as test input.

Parameters Used in App

Use the Default parameters with the Test data. Fill in the output section like so:

Output file basename: clfo1_vs_insecta

Database of query id: i5k

Assigned by field for your GAF output file: <your name>

Taxon ID of the peptide you are BLASTing: 29053

Output File(s)

clfo1_v_insecta.asn–BLAST output for conversion to other formats

clfo1_v_insecta.html–pairwise alignments from BLAST search

clfo1_v_insecta.tsv--tab-delimited BLAST output

clfo1_v_insecta_goanna_gaf.tsv–gene association file with transferred GO annotations

 

Tool Source for App

https://github.com/AgBase/GOanna

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