Community rating: ?????
An R script for simple gwassing. Adapted from the work of researchers at NIAB.
- A genotype and at least one phenotype file are required, as well as the phenotype to associate with the SNP.
- Resources: https://github.com/cyverseuk/GWASSER
A genotype and at least one phenotype file with headers are required. A map file may be additionally provided (that is required if you wish to print a plot).
Parameters Used in App
The phenotype to associate with SNPs is the only required parameter.
The user can additionally include a phenotype as mixed effects, and choose if to create and save plot and intermediate files.
The main output file will be a SNP association CSV file. There may be an association plot and intermediate tables depending on the chosen options.