The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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GenSel

GenSel comprises a portfolio of alternative analyses relevant to Genomic Selection.

App Creator

Liya Wang

Quick Start

  • To use GenSel, import your data in the format specified in the manual.
  • Resources: Manual

Test Data

Icon

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> gensel.

Input File(s)

Use run.inp from the directory above as parameter file.

Use DMI.gs as phenotype file.

Use gpegeno.newbin as marker file.

Use DMIg.192 as file specifying markers to be included.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect five text files as output. For the test case, the output file you will find in the example_data directory are named run.cgrRes1, run.cgrResSamples1, run.ghatREL1, run.mrkRes1, and run.out1. 

Tool Source for App

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1 Comment

  1. ★★★★★ null (by haocheng)