The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.

HTProcess-prepare input directories-0.1 (USER MANUAL UNDER DEVELOPMENT)

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Arranges input files in directories for use with HTProcess-fastqc

Quick Start

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directory.

Input File(s)

Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.

  • Default parameters only, no further configuration needed.

OR

  • Use these parameters within the DE app interface:
    • parameter name - value/setting
    • parameter name - value/setting

Output File(s)

Expect a text file named after the input files as output. For the test case, the output file you will find in the example_data directory is named BeautifulProse.txt.

Tool Source for App

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