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Variable kmer metagenomic assembler
- To use IDBA_UD-1.1.2, import your data in fasta format.
- Resources: http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/
Use 220668.read-10 from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect a text file named after the input files as output. For the test case, the output file you will find in the example_data directory is named 220668.fa.