The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Interlace Paired FASTQ files

Interlace Paired FASTQ files weaves Read1 and Read2 files from paired-end sequencing into a single FASTQ file.

Quick Start

Test Data


Test data for this app appears directly in the Discovery Environment in the Data window under _Community Data -> iplantcollaborative -> example_data-> interlace_paired_fastq_files.

Input File(s)

Use 256_SRR040820_1.fastq and 256_SRR040820_2.fastq as inputs.

Parameters Used in App

Select read pairs (256_SRR040820_1.fastq is left hand read, 256_SRR040820_2.fastq is right hand read) and submit.

Output File(s)

Expect an interlaced file as output. Example is Interlace.fq

Tool Source for App