The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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KBase data upload

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This utility uploads files from iPlant Data Store to KBase Shock system

Quick Start

  • Obtain access token from Globus online, these are your credentials for using Kbase systems (see below how to do it using curl on command line)
    curl --user "username:password" "https://nexus.api.globusonline.org/goauth/token?grant_type=client_credentials" | python -mjson.tool
    use the values for access_token (without double quotes)

Test Data

Icon

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data  choose any file you like.

Parameters Used in App

None

Output File(s)

The log file KBase-Upload-Log.txt will have corresponding Shock ID for each file uploaded, these can be referred to in Kbase tools or for future operations in Kbase infrastructure

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