The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Kallisto

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kallisto is a program for quantifying abundances of transcripts from RNA-Seq data.

Quick Start

Test Data

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Test data for this app are temporarily not available in the Discovery Environment.

Input File(s)

FASTQ file(s) with the reads is required, additionally you may provide either FASTA file(s) to be indexed or an index file.

Parameters Used in App

It is suggested to look into the documentation of Kallisto for extensive discussion on the parameters.


Output File(s)

Will depend on the running mode.

Tool Source for App

https://pachterlab.github.io/kallisto/about.html

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