The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Linux stream editor 

Community rating: ?????

A general Linux tool for text editing and file reformatting. Otherwise known as sed.

Quick Start

Test Data


Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> linux_stream_editor

Input File(s)

Use testtranscripts.fa from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

The program to enter for sed is:

s/ /_/g

Output File(s)

The output file for the test data is testtranscripts2.fa

Tool Source for App

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