The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Meraculous is a whole genome assembler for Next Generation Sequencing data (Illumina).

 Quick Start

Test Data

  • Test data for Meraculous 2.2.6 can be found directly from Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> meraculous 

Input File(s)

Use these as the input files:

frags.fastq.25K

jumps.fastq.25K

meraculous.config 

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Under 'Input' choose select the directory with all of your input files as 'working directory'
  • Under 'Input' add all fastq files listed in your config file
  • Under 'Parameters' add your config file. The 'config_file_options.txt' file contains a description of the parameters that can be specified in the config file.
  • All other parameters should be left as default

Output File(s)

This analysis will generate many output files and folder. All of these files/folders can be found in the example data folder above under 'output'.

Tool Source for App

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