The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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MergeG2P 0.0.2

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Join genotype data with phenotype data by intersection.

Quick Start

    • To use MergeG2P 0.0.2, import your data in .txt format.

 

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->GWAS -> marker_selection->awk_output.txt and _Community Data -> iplantcollaborative -> example_data ->GWAS ->_TNRS4GWAS->trait_tnrs.txt

Input File(s)

Use awk_output.txt and trait_tnrs.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use the Default parameters only, no further configuration needed.

Output File(s)

Expect 5 .txt files as output.  Out of those 5 files markers_merged.txt and trait_merged.txt are the ones needed.

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