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- To use Oases 0.2.08, import the output of velvetg, after running velveth and velvetg on a set of transcript reads.
- Resources: https://www.ebi.ac.uk/~zerbino/oases/
Use the entire velvetg output directory (in tar.gz format) as the input (VelvetG_Out.tar.gz).
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
The insert size for short paired reads is set to 300, and the SD for these is 60. Set the minimum transcript output length to 200.
Expect Oases_Out.tar.gz and transcripts.fa as output.