PhyML reconstructs phylogenetic trees using Maximum Likelihood.
- To use PhyML, upload your data in Phylip format.
- Resources: documentation
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:
Community Data > iplantcollaborative > example_data > phyml > data
- Requires an alignment file an Phylip format. May be a DNA (nt) or AA (amino acid) alignment
- Test data: Use aln.phy as a test input file.
Parameters Used in App
- You will need to specify if the alignment file is DNA (nt) or AA. By default AA is selected
- Expected outputs: