The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Prodigal 

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This app is based on Prodigal tool for gene calling. It supports both the gene and meta genes.

Quick Start

  • prodigal

    Description and Quick Start

    Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.

    Test Data

    /iplant/home/shared/imicrobe/kyclark

    Input File(s)

    FASTA

    Parameters Used in App

    None

    Output File(s)

    Gene predictions

  • HOW TO USE: https://www.protocols.io/view/Prodigal-Gene-Caller-faqbidw
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