The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

The box below searches only this space.
To search the entire iPlant wiki, enter your query in the box at the upper right.

 

 

 

 

 

Skip to end of metadata
Go to start of metadata

QTL Cartographer

The QTL Cartographer is a suite of programs to map quantitative traits using a map of molecular markers. Output files include qtlcart.log and qtlcart.rc (parameter file) for each program.

Quick Start

  • To use QTL Cartographer, upload your data and then run any of the analyses below.
  • Resources: documentation

Implemented Tools from QTL Cartographer

Test Data

Input File(s)

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Tool Source

Page: Eqtl Page: JZmapqtl Page: LRmapqtl Page: MImapqtl Page: QTLC_Prune2 Page: Prune Page: Rcross Page: Rmap Page: QTLC_Rmap2 Page: Rqtl Page: SRmapqtl Page: Zmapqtl