The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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QTL simulation workflow

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Automatic QTL Cartographer based workflow for simulating trait data with given linkage map.

Quick Start

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> qtlc_simulation_workflow.

Input File(s)

Use qtlcart.map from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect various text files as output. For the test case, the output files you will find in the example_data directory are named Prune.crb, qtlcart.log, qtlcart.rc, Rcross.cro, Rmap.map, and Rqtl.qtl

Tool Source for App

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