The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Ray-2.3.1 

Community rating: A1 fantastic

Parallel Assembler for Illumina reads.

Quick Start

Test Data

Icon

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Ray2.2.0

Input File(s)

Use the entire "Reads" directory in the example_data section.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect an output file with many files, including a scaffolds file and a contig file as output. 

Tool Source for App

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