Illumina read quality control pipeline for paired and unpaired reads (maintains pairing)
- To use Pre-Process Reads, import your data in fastq format.
- Resources: https://github.com/jts/sga
Use frag_1.fastq, frag_2.fastq from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use the default settings with frag_pr_preproc.fq as the name for the output.
Expect a fastq file named according to the input name. For the test case, the output file you will find in the example_data directory is named frag_pr_preproc.fq.