Samtools 1.7 Index BAM file
Create an index (.bai) file from a BAM file.
- To use Samtools 1.7 Index BAM file, import your data in BAM format.
Use sorted.bam from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- There are no parameters for this app.
Expect an output named like you input file with a .bai extension. For the test case, the output file you will find in the example_data directory is named sorted.bam.bai