The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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SnapATAC

SnapATAC (Single Nucleus Analysis Pipeline for ATAC-seq) is a fast, accurate and comprehensive method for analyzing single cell ATAC-seq datasets.

App Creator

Reetu Tuteja

 


Quick Start


  • Username: rstudio
    Password: rstudio1

  • Test data for SnapATAC appears in the Discovery Environment in the Data window under /iplant/home/shared/iplantcollaborative/example_data/SnapATAC_sampledata


Video Tutorial


https://www.loom.com/share/65badfcec3d841768bd1c9b4b4ae9f91

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