The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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VCF to GFF3

VCF to GFF3 is a script that transforms files from VCF format to GFF3 format.

Quick Start

  • To use VCF to GFF3, upload your data in VCF format.

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > vcf_to_gff3

Input File

  • Use test.vcf as test data.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect iplant_vcf_to_gff.gff as output.

Tool Source for App

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