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VCF to GFF3
VCF to GFF3 is a script that transforms files from VCF format to GFF3 format.
- To use VCF to GFF3, upload your data in VCF format.
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:
Community Data > iplantcollaborative > example_data > vcf_to_gff3
- Use test.vcf as test data.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect iplant_vcf_to_gff.gff as output.