The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

The box below searches only this space.
To search the entire iPlant wiki, enter your query in the box at the upper right.

 

 

 

 

 

Skip to end of metadata
Go to start of metadata

VarScan-2.3.6 SNP caller

Community rating: ?????

variant detection in massively parallel sequencing data.

Quick Start

Test Data

Icon

Input File(s)

Use the linked file above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a SNP file as output. For the test case, the output file you will find at the link: http://de.iplantcollaborative.org/dl/d/D9756156-1FA1-48D5-83A3-77F49F2A4829/RIL71.snp

Tool Source for App

  • No labels