The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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 XYPlot 0.0.2

Community rating: ?????

Generate XY plot from column-wise data file

Quick Start

Test Data


Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> GWAS -> AdjustPvalue

Input File(s)

Use out.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use the following parameters Column number of X 2, Column number for Y 3, X label loci Y label -log10(Pval),
 for title type Manhattan Plot.

Output File(s)

Expect a an out.png file as output.

Tool Source for App

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