The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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For use in mutant identification pipeline (Workflow:Mutant Identification 1) to label and prepare MUTANT BULK SNP file before concatenation using awk

Quick Start

Test Data

Input File(s)

Use the file above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a SNP file named Prepared.snp as output. For the test case, the output file you will find is: http://de.iplantcollaborative.org/dl/d/81CB2891-8BD4-49C9-A57D-027C5878D6D8/Prepared.snp

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