The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Combine GAFs

Combines gene association files (GAF) from InterProScan ( with XML parser) and GOanna. 

Quick Start

Test Data

(info)

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> combine_GAFs

Input File(s)

Use CFLO_1.fa_gaf.txt  and clfo1_v_insecta_goanna_gaf.tsv from the directory above as test inputs.

Parameters Used in App

Use the Default parameters with the Test data. 

Fill in the the Output File Name filed with a suitable name for you output file.

Output File(s)

complete_CLFO_gaf.tsv is the combined GAF file

 

Tool Source for App

https://github.com/AgBase/combine_GAFs

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