The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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maker2jbrowse

Community rating: ?????

This script takes MAKER produced GFF3 files and dumps them into a JBrowse for you using pre-configured JSON tracks.

Quick Start

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> maker.

Input File(s)

Use contig-dpp-500-500.gff from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a data directory as output. For the test case, the output directory you will find in the directory above is named data.

Tool Source for App

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