The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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maker2zff

Community rating: ?????

Pulls out MAKER gene models from the MAKER GFF3 output and convert them into ZFF format for SNAP training.

Quick Start

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> maker.

Input File(s)

Use contig-dpp-500-500.gff from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect genome.ann and genome.dna  as output. For the test case, the output files you will find in the example_data directory are named genome.ann and genome.dna.

Tool Source for App

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1 Comment

  1. ☆☆☆☆☆ Can the rest of the maker2 package made integrated? (by mosalem)