rePair-Fix Read Pairing
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Repairs paired read files that have lost pairing on some reads because of preprocessing.
- To use rePair-Fix Read Pairing, import your data in fastq format. This app will likely work only with fastq files in older Illumina formats, e.g. pair names ending with \1.fastq and \2.fastq.
- Resources: https://sourceforge.net/projects/ngopt/
Use testqf_1.fastq and testqf_2.fastq from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect 3 files named with input prefix as output. For the test case, the output files you will find in the example_data directory are named: