This box searches only this space. The box at the upper right searches the entire iPlant wiki.

Skip to end of metadata
Go to start of metadata
Date and TimeWednesday November 29, 2017 12PM-5PM (US Eastern Time)

Organizers:

Liya Wang, Kapeel Chougule, Josh Stein, Jason Williams (CyVerse)

Marcela Karey Tello-Ruiz (Gramene)

Cristina Fernandez-Marco (MaizeCode)

Local Point of Contact:

Marcela Karey Tello-Ruiz, Cristina Fernandez-Marco

Location

Bush Lecture Hall, Cold Spring Harbor Laboratory (Building 4 on Campus Map)

LiveStream Linkhttps://livestream.com/cshl-dnalc/bioinformatics-for-plant-genomics


Workshop Prep

1. CyVerse Account

2. Atmosphere Access

3. Laptop

Please bring your own Wi-Fi enabled laptop to the workshop. Make sure your laptop has the following:

Agenda

Time
Topic/Activity
Presenter
Slides
Guides
Notes/Links
12:00 PMBoxed-Lunch / Sign-in / Verify CyVerse Accounts    

12:15 PM

Speaker/Project Intros and Overview of CyVerse

All, Kapeel (CyVerse Intro)slides 

12:30 PM

Data uploading and sharing with CyVerse

Kapeelslidesguide

 

01:00 PMOverview of sequencing and assembly technologiesJosh slides  

01:30 PM

Intro to MAKER annotation pipeline

Josh  

 

01:45 PMBreak    

02:00 PM

Annotation with SciApps

Liya

slides

tutorial

02:45 PM

Intro to Gramene and Data wrangling

Marcela

slides

 

03:30 PM

Community-Driven Genome Curation

Monica

slides

 
04:15 PMAdditional resources: KBase Vivek  
04:30 PMWrap up and questionsAll   

Speakers and Affiliations


Kapeel Chougule

Cold Spring Harbor Laboratory

CyVerse, Gramene

 

Marcela Karey Tello-Ruiz

Cold Spring Harbor Laboratory

Gramene

 

Vivek Kumar

Cold Spring Harbor Laboratory

KBase


Cristina Fernandez-Marco

Cold Spring Harbor Laboratory DNA Learning Center

MaizeCode

 

Monica Munoz-Torres

Phoenix Bioinformatics.
Formerly: Project Manager for Apollo at Lawrence Berkeley Lab.

 

Joshua Stein

Cold Spring Harbor Laboratory

Gramene, CyVerse


Liya Wang

Cold Spring Harbor Laboratory

CyVerse, MaizeCode


 


 

 


  • No labels