Sample names to be changed
From time to time we may alter the species name recorded for a sample. While this is most often just to correct a slight error in spelling or to use a taxonomic synonym that is judged to be a better choice, we also have cases where we now believe that the original record is incorrect. Since these names are embedded in many of the file contents, it is quite a lot of work to change everything in our databases. We therefore decided to only make the changes before submission for publication. In the meantime we have created this page so that everyone knows the current status.
Samples thought to contain more than one species
| Current Best Name | Name Used in Files | Comments |
|---|---|---|---|
NWQC | mixed species | Plagiochila_asplenioides | Plagiochila asplenioides and Fissidens adianthoides found in voucher |
CHJJ | Frullania spp. | Lejeuneaceae_sp. | mixed: Frullania inflata (majority) and some F. Eboracensis found in voucher |
RXRQ | mixed species | Phaeoceros_carolinianus | two types of photoreceptor genes, 2nd close to Anthoceros, verified in voucher |
AEKF | mixed species | Penium_margaritaceum | 2nd rbcL present (Deschampsia-like) |
IQJU | mixed species | Anthoceros_formosae | appears to have a Festuca contaminant |
BMZI | Mollugo spp. | Mollugo_pentaphylla | mixture of M. Pentaphylla and M. verticillata |
UXCS | mixed species | Marattia_sp. | two rbcL sequences, one Angiopteris-like, the other to Bolbitis-like |
Samples reclassified upon inspection of the sequence data
| Current Best Name | Name Used in Files | Comments |
|---|---|---|---|
PZRT | Nymphaea sp. | Nelumbo_nucifera |
|
AFPO | Athyrium filix-femina | Blechnum_spicant |
|
BMJR | Adiantum raddianum | Adiantum_tenerum | revised from chloroplast marker sequences |
ISGT | Uronema sp. | Hormidiella_sp. |
|
PWKQ | Gracilaria sp. | Prionitis_divaricata |
|
JQFK | Picochlorum atomus | Nannochloropsis_oculata | synonym confusion in original name |
STKJ | Cosmarium ochthodes | Zygnema_sp. | two samples mixed-up in sequencing |
HJVM | Zygnema sp. | Cosmarium_ochthodes | two samples mixed-up in sequencing |
GCYL | Portulaca suffrutescens | Portulaca_suffruticosa |
|
| PGKL | Phellodendron_amurense | sample appears to be a Juglandaceae |
Samples that may contain mislabeled data
A special case of names changes is a set of assemblies that were erroneously constructed from the wrong source data. Correct assemblies are now available, but not all derived data/files have yet been replaced. Scaffolds numbered in the 200000-2999999 range should not be used, with the corrected replacements being in the 3000000-3999999 range.
| Species Name | Additional Description |
|---|---|---|
GDUD | Chloromonas reticulata | B |
OVHR | Chlamydomonas bilatus | B |
WGMD | Zygnema sp. | B |
NLOM | Pediastrum duplex | B - CCAC 0012 |
FMRU | Zygnema sp. | 2 samples combined |
YOHC | Pediastrum duplex | 2 samples combined |
JRDV | Pediastrum duplex | 3 samples combined |
SRGS | Chlamydomonas bilatus | 2 samples combined |
ZLBP | Chloromonas reticulata | 2 samples combined |
Combined samples affected by reclassification of a source sample
| Species Name | Comments |
|---|---|---|
RWYZ | was Blechnum spicant | Athyrium / Blechnum mix |
GMRU | was Zygnema sp. | Zygnema / Cosmarium mix with brown algae detected |
SRGS | was Chlamydomonas bilatus | blown algae detected |
ZLBP | was Chloromonas reticulara | brown algae detected |
Samples renamed for unidentified reasons (Please contact Eric Carpenter if you know what happened)
| Current Best Name | Name Used in Files | Comments |
|---|---|---|---|
LNER | Casuarina equisetifolia | Casuarina_glauca |
|
IOVS | Pseudotsuga wilsoniana | Pseudotsuga_menziesii |
|
ZXJO | Parahemionitis arifolia | Hemionitis_arifolia |
|
Samples where a different synonym is suggested
| Current Best Name | Name Used in Files | Comments |
|---|---|---|---|
DCDT | Gaga arizonica | Cheilanthes_arizonica |
|
GSXD | Cheilanthes eatonii | Myriopteris_eatonii |
|
VPDX | Euphorbia mesembryanthemifolia | Chamaseyce_mesebyranthemum |
|
LSLA | Euphorbia mesembryanthemifolia | Chamaseyce_mesebyranthemum |
|
TCBC | Nothoceros vincentianus | Megaceros_vincentianus |
|
GDYP | Boerhavia burbidgeana | Boerhavia_dominnii |
|
HUGU | Boerhavia burbidgeana | Boerhavia_dominnii |
|
Samples with names revised by the plant provider
(Many are taxonomic reclassifications, but some may be changes to taxonomic synonyms)
| Current Best Name | Name Used in Files | Comments |
|---|---|---|---|
WTJG | Ophioglossum petiolatum | Ophioglossum_vulgatum |
|
ZQYU | Phlebodium pseudoaureum | Polypodium_plectolens |
|
JBLI | Bolbitis repanda | Danaea_sp. |
|
VBMM | Claopodium rostratum | Anomodon_rostratus |
|
ABCD | Racomitrium elongatum | Niphotrichum_elongatum |
|
XWHK | Rosulabryum cf. capillare | Funaria |
|
YEPO | Physcomitrium sp. | cf._Physcomicromitrium_sp. |
|
WSPM | Loeskeobryum brevirostre | Rhytidiadelphus_loreus |
|
ZACW | Leucodon brachypus | Leucodon_sciuroides |
|
LNSF | Stereodon subimponens | Hypnum_subimponens |
|
IGUH | Leucodon julaceus | Schwetschkeopsis_fabronia |
|
UCRN | Megaceros flagellaris | Megaceros_tosanus |
|
WJLO | Ricciocarpos natans | Riccia_berychiana |
|
OPZX | Sesuvium verrucosum | Sessuvium_ventricosum |
|
ZJDK | Sesuvium verrucosum | Sessuvium_ventricosum |
|
EGOS | Allionia incarnata | Allionia_spp. |
|
WHHY | Boerhavia coccinea | Boerhavia_cf._spiderwort |
|
MBWM | Boerhavia coccinea | Boerhavia_cf._spiderwort |
|
BYNZ | Portulaca umbraticola | Portulaca_mauii |
|
JWEY | Heliotropium tenuifolium | Heliotropium_sp. |
|
DESP | Erigeron canadensis | Erigeron_speciosus |
|
JTRM | Dipsacus asper | Dipsacus_sativum |
|
ORJE | Phymatosorus grossus | Cibotium_glaucum |
|
ZULJ | Pyropia yezoensis | Porphyra_yezoensis |
|
XAXW | Neosiphonia japonica | Polysiphonia_japonica |
|
CKXF | Ahnfeltiopsis flabelliformis | Gymnogongrus_ftabelliformis |
|
BWVJ | Betaphycus philippinensis | Betaphycus_gelatinae |
|
VNAL | Gracilaria vermiculophylla | Gracilaria_asiatica |
|
PYDB | Grateloupia catenata | Sinotubimorpha_guangdongensis |
|
RAPY | Saccharina sculpera | Kjellmaniella_crassifolia |
|
OGZM | Saccharina japonica | Laminaria_japonica |
|
QDTV | Saccharina japonica | Laminaria_japonica |
|
LDRY | Sargassum fusiforme | Hizikia_fusifrome |
|
| EBWI | Rebecca salina | Ochromonas_sp. | strain re-identified by 18S |
| BBDD | Lepidothamnus sp. | Microstrobos_fitzgeraldii |
Sample names with minor changes in the spelling
| Current Best Name | Name Used in Files | Comments |
|---|---|---|---|
NWMY | Kadsura heteroclita | Kadsura_heteroclite |
|
SIIK | Hakea drupacea | Hakea_drupaceae |
|
ZUHO | Anemone hupehensis | Anemone_hupenhensis |
|
GJNX | Cypselea humifusa | Cypselea_humifusum |
|
HZTS | Sesuvium portulacastrum | Sessuvium_portulacastrum |
|
QNIK | Trianthema portulacastrum | Trianthemum_portulacastrum |
|
TNVE | Trianthema portulacastrum | Trianthemum_portulacastrum |
|
CUTE | Blutaparon vermiculare | Blutoparon_vermiculare |
|
KTQI | Alternanthera brasiliana | Alternanthera_brasileana |
|
ENCD | Alternanthera brasiliana | Alternanthera_brasileana |
|
SKNL | Saponaria officinalis | Saponaria_officianalis |
|
HUGU | Boerhavia dominii | Boerhavia_dominnii |
|
GDYP | Boerhavia dominii | Boerhavia_dominnii |
|
UQCB | Portulaca molokiniensis | Portulaca_molokaiensis |
|
BGZG | Cissus quadrangularis | Cissus_quadrandularis |
|
NEBM | Syzygium micranthum | Syzygium_macranthum |
|
KVAY | Tribulus eichlerianus | Trubulus_eichlerianus |
|
RKLL | Copaifera officinalis | Copaifera_officianalis |
|
RIDD | Glycine soja | Gylcine_soja |
|
PFSA | Glycine soja | Gylcine_soja |
|
TJMB | Glycine soja | Gylcine_soja |
|
AKRH | Glycine soja | Gylcine_soja |
|
FPLR | Glycine soja | Gylcine_soja |
|
LQUX | Glycine soja | Gylcine_soja |
|
ZSSR | Xanthocercis zambesiaca | Xanthicercis_zambesiaca |
|
NFXV | Mammea americana | Mumea_americana |
|
FWCQ | Garcinia oblongifolia | Garcinia_oblongiflolia |
|
COAQ | Malesherbia fasciculata | Malesherbia_fasiculata |
|
CSUV | Cochlearia officinalis | Cochlearea_officinalis |
|
QSKP | Polanisia trachysperma | Polansia_trachysperma |
|
HELY | Cleome violacea | Cleome_violaceae |
|
EZXQ | Cleome violacea | Cleome_violaceae |
|
CRNC | Limnanthes douglasii | Limnanthes_douglassii |
|
BFJL | Cornus florida | Cornus_floridana |
|
YSRZ | Fouquieria macdougalii | Fouqueria_macdougalli |
|
NJJO | Pilostyles thurberi | Pilostyles_thunbergii |
|
NIGS | Heliotropium karwinskyi | Heliotropium_karwinsky |
|
QEHE | Rauvolfia tetraphylla | Rauvolfia_tetraphyla |
|
WEAC | Strobilanthes dyeriana | Strobilanthes_dyerianus |
|
PCGJ | Anisacanthus quadrifidus | Anisacanthus_quadrifidas |
|
DCVZ | Plantago coronopus | Plantago_coronopis |
|
TPUT | Antirrhinum majus | Anthirrhinum_majus |
|
EBOL | Antirrhinum majus | Anthirrhinum_majus |
|
AHRN | Cuscuta pentagona | Cuscuta_pentagonia |
|
DLJZ | Solanum ptycanthum | Solanum_ptychanthum |
|
AJFN | Myodocarpus sp. | Mydocarpus_sp. |
|
WSYE | Conyza canadensis | Conzya_canadensis |
|
NUSE | Conyza canadensis | Conzya_canadensis |
|
UBLN | Xanthium strumarium | Xanthuium_strumarium |
|
OAGK | Matricaria matricarioides | Matricaria_matricariodes |
|
DSWR | Flaveria cronquistii | Flaveria_cronquestii |
|
KJBH | Flaveria cronquistii | Flaveria_cronquestii |
|
FFFY | Valeriana officinalis | Valeriana_officianalis |
|
MFIN | Pistia stratioites | Pistia_stratioides |
|
XZME | Drakaea elastica | Drakea_elastica |
|
RQZP | Nolina bigelovii | Nolina_bigelorii |
|
TCYS | Peliosanthes minor | Peliosanthese_minor |
|
KYNE | Cyanella orchidiformis | Cyanella_orchidofromis |
|
LSKK | Orchidantha maxillarioides | Orchidantha_maxillaroides |
|
JQCX | Curcuma longa | Curcuma_olena |
|
OYLU | Curcuma longa | Curcuma_olena |
|
ACWS | Araucaria sp. | Arucaria_sp. |
|
NPRL | Cathaya argyrophylla | Cathaya_agryrophylla |
|
AWQB | Picea engelmannii | Picea_engelmanii |
|
JRNA | Phyllocladus hypophylla | Phyllocladus_hypohyllus |
|
ULKT | Lycopodiella appressa | Lycopodiella_apressa |
|
JVSZ | Equisetum hyemale | Equisetum_hymale |
|
FLTD | Pteris ensiformis | Pteris_ensigormis |
|
UHLI | Sphagnum recurvum | Sphagnum_recurvatum |
|
BNCU | Radula lindenbergiana | Radula_lindenbergia |
|
FITN | Treubia lacunosa | Treubia_lacunose |
|
XOAL | Dolichomastix tenuilepis | Dolichomastix_tenuilepi |
|
MMKU | Nephroselmis olivacea | Nephroselmis_olivace |
|
RAWF | Uronema belkae | Uronema_belka |
|
DVYE | Oedogonium cardiacum | Oedogonium_cardiacu |
|
AJUW | Chloromonas rosae | Chloromonas_rosa |
|
UTRE | Chloromonas tughillensis | Chloromonas_tughillensi |
|
ODXI | Haematococcus pluvialis | Haematococcus_pluviali |
|
MNCB | Eremosphaera viridis | Eremosphaera_viridi |
|
DXNY | Microthamnion kuetzingianum | Microthamnion_kuetzigianum |
|
ZDOF | Microthamnion kuetzingianum | Microthamnion_kuetzigianum |
|
OAEZ | Percursaria percursa | Persursaria_percursa |
|
BFIK | Entransia fimbriata | Entransia_fimbriat |
|
MOYY | Pleurotaenium trabecula | Pleurotaenium_trabecul |
|
NBYP | Mesotaenium kramstae | Mesotaenium_kramstei |
|
LLXJ | Chroodactylon ornatum | Chroodactylon_ornatu |
|
SBLT | Gloiopeltis furcata | Gloeopeltis_furcata |
|
IKWM | Gracilaria lemaneiformis | Gracilaria_lemaneiformi |
|
APTP | Ishige okamurae | Ishige_okamurai |
|
JCXF | Scytosiphon lomentaria | Scytosihon_lomentaria |
|
ULXR | Scytosiphon dotyi | Scytosiphon_dotyo |
|