(Through Discovery Environment, open a SequenceServer app, upload a query through the input GUI on DE, run, and look at analysis.)?
It all starts with an account on CyVerse where you can access the Discovery Environment once logged in. An app which previously existed can be used to generate a potential database. We created an app called "sequenceserver" to utilize the output of that app as the database to test a query against. If you already have a database, there is no requirement to run the app called “Create BLAST database-2.6.0+".
The instructions are in the pdf: Procedures for DE sequence analysis.pdf
Benchmarking was ran by running the sequenceserver app we created in the Discovery Environment (DE) within CyVerse. Before launching the app, the number of cores was specified in the drop-down field "Number of threads":