This panel searches content only in this space. To search content in all spaces, use the box at the upper right.


For overview information, see Discovery Environment on the CyVerse website.

DISCOVERY ENVIRONMENT USER MANUAL

Maintenance: Tues, 28 Jan 2020

ACCESS TO OR USAGE OF THE FOLLOWING SERVICES WILL BE UNAVAILABLE OR DISRUPTED:

Discovery Environment         8:00am to 5:00pm MST
The Discovery Environment will be unavailable while patches and updates are applied.
        ** Currently running analyses will be terminated. Please plan accordingly.

Data Store                    8:00am to 5:00pm MST
The Data Store will be unavailable during the maintenance period.
 
Data Commons                  8:00am to 5:00pm MST
The Data Commons will be unavailable during the maintenance period.
 
Atmosphere and Cloud Services 8:00am to 5:00pm MST
Marana Cloud: Atmosphere instances in the Marana Cloud will be operational; however, you will not be able to use the Data Store within your instance, and you may not be able to access the Atmosphere web interface.
 
User Portal                   8:00am to 5:00pm MST
The User Portal, http://user.cyverse.org, will be unavailable while we perform maintenance and updates.
 
Agave/Science API             8:00am to 5:00pm MST
The Agave/Science API will be unavailable during this maintenance period.
 
DNA Subway                    8:00am to 5:00pm MST
DNA Subway will be unavailable during this maintenance period.
 
The following services will NOT be affected by the maintenance: CyVerse Wiki and JIRA

Keep up to date with our maintenance schedules on the CyVerse public calendar
http://www.cyverse.org/maintenance-calendar
Check your local timezone here https://bit.ly/36iVOkX 
 
Please contact support@cyverse.org for any questions, or concerns.
 
Thank You,
CyVerse Staff 

 

 

 

 

 

 

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Show If
groupStaff

Red2.9 (visible to staff only)

Section
Column
width60%

Welcome to the user manual for the CyVerse Discovery Environment (DE). Here you'll find all the how-to instructions for using the DE. To get you started, you may want to read through the introductory information in the Quick Links. Hints for how to use this manual are also on this page, as well as how to search for topics in this wiki space, and navigating the DE.

Quick links

Navigating this manual

View all pages for the Discovery Environment manual in the Table of Contents in the left panel. If the Table of Contents is not displayed on the left, click the Show or hide sidebar icon at the top right of the screen:

This manual uses the familiar method of organizing pages by folder. To expand a folder, click the  next to the page.

Searching for topics

You can search for topics about the Discovery Environment, or search for topics in all CyVerse spaces.

The CyVerse Wiki uses the Atlassian Confluence open source application. For assistance with creating useful search queries for use on the CyVerse wiki pages, please see Confluence Search Syntax or Searching Confluence.

  • To search in the Discovery Environment manual only: To find a topic about the Discovery Environment, enter a word or phrase in the search field at the upper left of the screen above the navigation list:
  • To search all spaces in the entire CyVerse wiki: Enter a word or phrase in the Search Confluence field at the upper right of the screen next to your username:

About using this user guide

Exporting a page to PDF

A logged-in user can export a page in this manual as a PDF. To do so, click Tools at the top right, click Export to PDF, and then save to your system.

If you find an error in the manual, have a question, or want to make a suggestion regarding the documentation for this manual, please email Kathleen Kennedy, Documentation Coordinator. Thanks for your help!

If you find an error, have a question, or want to make a suggestion regarding the documentation for an app in the DE, please contact the integrator of the app.

Navigating the app

While much of the interface is intuitive and easy to use, there are a few tips to keep in mind as you move between windows in the DE.

Anchor
MainIcons
MainIcons
Main icons

At the top right are the main icons:

Lists status update notifications and information about data or analyses actions.

Links to setting preferences; viewing or editing the Collaborators list; viewing system messages, documentation, Introduction to the DE, and release information; contacting CyVerse Support; and logging out of the DE.

Opens the Ask CyVerse Forums, where you can ask questions as well as view questions and answers by other CyVerse users.

Open window tabs

Include Page
docs:_openWindowTabs
docs:_openWindowTabs

Anchor
WindowIcons
WindowIcons
Layout (Snap Left or Snap Right), Minimize/Maximize, and Close window icons

Include Page
docs:_windowIcons
docs:_windowIcons

Column
width35%
Panel
bgColorWhiteSmoke
titleBGColorSteelBlue
titleHelpful Links
borderWidth1px
titleColorWhite

 On This Page:

Table of Contents
maxLevel2

Related Pages:

 

 

Show If
groupStaff

2.9 CONTENT (visible to staff only)

 

60%

Welcome to the user manual for the CyVerse Discovery Environment (DE). Here you'll find all the how-to instructions for using the DE. To get you started, you may want to read through the introductory information in the Quick Links. Hints for how to use this manual are also on this page, as well as how to search for topics in this wiki space, and navigating the DE.

Quick links

Navigating this manual

View all pages for the Discovery Environment manual in the Table of Contents in the left panel. If the Table of Contents is not displayed on the left, click the Show or hide sidebar icon at the top right of the screen:

This manual uses the familiar method of organizing pages by folder. To expand a folder, click the  next to the page.

Searching for topics

You can search for topics about the Discovery Environment, or search for topics in all CyVerse spaces.

The CyVerse Wiki uses the Atlassian Confluence open source application. For assistance with creating useful search queries for use on the CyVerse wiki pages, please see Confluence Search Syntax or Searching Confluence.

  • To search in the Discovery Environment manual only: To find a topic about the Discovery Environment, enter a word or phrase in the search field at the upper left of the screen above the navigation list:
  • To search all spaces in the entire CyVerse wiki: Enter a word or phrase in the Search Confluence field at the upper right of the screen next to your username:

About using this user guide

Exporting a page to PDF

A logged-in user can export a page in this manual as a PDF. To do so, click Tools at the top right, click Export to PDF, and then save to your system.

If you find an error in the manual, have a question, or want to make a suggestion regarding the documentation for this manual, please email Kathleen Kennedy, Documentation Coordinator. Thanks for your help!

If you find an error, have a question, or want to make a suggestion regarding the documentation for an app in the DE, please contact the .

Navigating the app

While much of the interface is intuitive and easy to use, there are a few tips to keep in mind as you move between windows in the DE.

MainIconsMain icons  

At the top right are the main icons:

Lists status update and information about data or analyses actions.

Links to setting ; viewing or editing the Collaborators list; viewing system messages, documentation, Introduction to the DE, and release information; contacting CyVerse Support; and logging out of the DE.

NEED

Opens the Ask CyVerse Forums, where you can ask questions as well as view questions and answers by other CyVerse users.
UPDATE FOR NEW LINKS (CORE 8355: Add FAQs link, Forum link and Feedback link)

Open window tabs

E

REPLACE GRAPHIC

WindowIconsLayout (Snap Left or Snap Right), Minimize/Maximize, and Close window icons

35%WhiteSmokeSteelBlueHelpful Links1pxWhite

 On This Page:

2

Related Pages: