The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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The InterProScan_Results_Function app will parse InterProScan XML result files and generate readable tables and a gene association file (GAF) file that can be used in subsequent GO enrichment analyses and functional data count files. For this app to work, InterProScan must have been run with the GO annotation and pathways annotation parameters checked (default setting).

https://pods.iplantcollaborative.org/wiki/display/DEapps/InterProScan_Results_Function

Quick Start

  • To use InterProScan_Results_Function, import your xml output file from InterProScan (InterproScan 5.17.56). 

Test Data

Info

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directory interproscan_results_function.

Output Tables

All tables are tab separated, with multiple values separated by a semi-colon. Tables are txt files that may be opened in text-editors or loaded into Excel.

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