The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Set the lower kmer limit values to 21 and the upper limit to 31, with an increment of 10. Diploid is set to false and 2 passes are run., 27, and 35. 

Output File(s)

Expect the files found in Community Data -> iplantcollaborative -> example_data -> htprocess1 -HTProcess_Jellyfish. Click on jellyfish_report.html to open the report from Jellyfish in the DE. For each kmer setting entered 3 graphs will be produced in the same row – each being the same graph with a different Y axis limit to provide different views of the data.

Tool Source for App