eFP Batch Retrieve

eFP Batch Retrieve retrieves a gene expression image for each Arabidopsis thaliana gene locus identifier in an input file.

Quick Start

• To use eFP Batch Retrieve, upload your data in plain text format, with one gene locus per line.
• Resources: Arabidopsis eFP Browser

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > eFP_batch_tool

Input File(s)

Use eFPinput.txt as test data. Import from URL to get the data into your Discovery Environment account.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

• Default parameters only, no further configuration needed.

Output File(s)

Expect a directory of PNG image files as output. This directory will be named after the BAR data source you have selected. For example, selecting the Developmental Map resource will result in a Developmental_Map folder containing one file per gene.

The genes-not-recognized-by-efp-service.txt file will contain any gene IDs not recognized by the eFP service. In the example data submitted, it should contain AT3G01345

Tool Source for App

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