To search content in this manual only, enter your query above. To search for content in the entire CyVerse wiki, enter your query at the top right.
__________________

DATA COMMONS USER MANUAL
Maintenance Notice 23 Oct 2018

CyVerse systems will be unavailable on Tuesday, October 23rd, from 7:00am to 5:00pm MST.
Check your local timezone here https://goo.gl/iLJg6R

Keep up to date with our maintenance schedules on the CyVerse public calendar
http://www.cyverse.org/maintenance-calendar

ACCESS TO OR USAGE OF THE FOLLOWING SERVICES WILL BE UNAVAILABLE OR DISRUPTED:

Discovery Environment:        7:00am to 5:00pm MST

The Discovery Environment will be unavailable while patches and updates are applied.
        ** Currently running analyses will be terminated. Please plan accordingly.

DataS
tore                    
7:00am to 5:00pm MST
The DataStore will be unavailable during the maintenance period.

Atmosphere                   
7:00am to 5:00pm MST
Atmosphere instances will be operational; however, you will not be able to use the Data Store within your instance.

User Portal                   7:00am to 5:00pm MST
The User Portal, http://user.cyverse.org, will be unavailable while we perform maintenance and updates.

Agave/Science API             7:00am to 5:00pm MST

The Agave/Science API will be unavailable during this maintenance period.


Please contact suppport@cyverse.org for any questions, or concerns.

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

The Data Commons (DC) is a growing and evolving platform, with many components spread throughout the CyVerse CI. Lacking our own team of dedicated developers, but having part-time access to most of CyVerse staff, plus some external collaborators, our development approach is to build the pieces that will provide the most benefit to our users as quickly as possible — and remain flexible and responsive to future needs. If you have suggestions or feedback on our projects, please log in to the CyVerse wiki and add your comments below.

 

This page is updated approximately once per quarter.

...

CyVerse Data Commons houses the subsets of CyVerse public data that has been shared with the public by community members (Community Released) and the data that has has been assigned permanent identifiers (PIDs) and is permanent and stable (CyVerse Curated Data). The Data Commons is housed in the CyVerse Data Store and available in the Discovery Environment under /iplant/home/shared/commons_repo/curated. All datasets in the DCR have minimal required metadata, based on the DataCite schema, as well as a ReadMe file that explains the contents of the dataset. DCR datasets are currently available through dc.cyverse.org, with the features described above.
Show If

userrwalls,kkennedy
(This shows only to Ramona & Kathleen). : Would it make more sense to say it is housed in the Data Store within the DE at ...? 

Planned features

  • Customized landing pages for data in DCR

...

  • DataCite metadata template for DOIs.
  • Pipeline for requesting DOIs through the DE. Using this pipeline, scientists organize their dataset into a single folder, apply the appropriate metadata and add a ReadMe file, and then request the DOI. At that stage, the folder is moved automatically to a staging folder and the PID curators can review the request using our administrative interface (Belphegor). The process is described in PID Creation SOP for Curators.

...

  • Ability to have multiples of the same metadata attribute (e.g., multiple Contributorscontributors) as part of the template
  • Ability to link metadata fields (e.g., link contributorType to Contributor)
  • Pipeline for generating ARKs
  • Ability for curators to update metadata using the EZID API via Belphegor
  • Science-specific metadata templates for images and sequence data
  • Preparation of PID datasets through the Projects Interface

...