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LEARNING MATERIALS
Maintenance Notification

CyVerse systems will be unavailable on Tuesday, September 18th, from 7:00am to 5:00pm MST.
Check your local timezone here https://goo.gl/CHqLph

Keep up to date with our maintenance schedules on the CyVerse public calendar
http://www.cyverse.org/maintenance-calendar

ACCESS TO OR USAGE OF THE FOLLOWING SERVICES WILL BE UNAVAILABLE OR DISRUPTED:

Discovery Environment:        7:00am to 5:00pm MST

The Discovery Environment will be unavailable while patches and updates are applied.
        ** Currently running analyses will be terminated. Please plan accordingly.

DataStore                    
7:00am to 5:00pm MST
The DataStore will be unavailable during the maintenance period.

Atmosphere                    7:00am to 5:00pm MST
Atmosphere instances will continue to run.
Commonly-used images will be available for launching instances, but users will be unable to create new images, or launch instances from rarely-used images, while we perform Atmosphere and DataStore maintenance.

User Portal                   7:00am to 5:00pm MST
The User Portal, http://user.cyverse.org, will be unavailable while we perform maintenance and updates.

Agave/Science API             7:00am to 5:00pm MST
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Please contact suppport@cyverse.org for any questions, or concerns.

 

 

 

 

 

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kapeelc@vm64-125:~/sleuth_analysis$ ls -lh
total 8.0K
-rw-r--r-- 1 kapeelc iplant-everyone  138 Jul 10 20:45 design_matrix
drwxr-x--- 8 kapeelc iplant-everyone 4.0K Jul 10 20:44 kallisto_qaunt_output

 

Section 2: Using R studio on atmosphere to do the interactive analysis using

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Sleuth R package

  1.  On the command line type below three commands to start a Rstudio and enter your Cyverse password. This will install all the dependencies needed to start Rstudio.

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